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The reading comprehension/grammar section should be worth 50% of the 400 points, if I understand the scoring correctly. However-as you have heard, of that 50%, the reading comp seems to be worth a bit more than the grammar. (In my practice test book, there are 100 points earned from the reading comp and 72 from the grammar.)
The scoring is a bit confusing without an answer sheet to look at, but I'll try. If you'd like, I can scan some stuff from my UNICOM practice test book, if you are more visual (like me ^^; ). Looking at my book, the level 2 test seems to be scored this way:
Moji/Goi (kanji/vocab): 65 questions - 90 points -- worth 25% of the final score
Moji: 40 questions in two sections
section 1: 20 questions - 1 point each (20 pts)
section 2: 20 questions - 1 point each (20 pts)
Goi: 25 questions in four sections
section 3: 10 Q - 2 pts (20 pts)
section 4: 5 Q - 2 pts (10 pts)
section 5: 5 Q - 2 pts (10 pts)
section 6: 5 Q - 2 pts (10 pts)
Choukai (listening comp.): 31 questions - 31 points -- worth 25% of the final score
section 1: 15 Q - 1 pt (15 pts)
section 2: 16 Q - 1 pt (16 pts)
Dokkai/bunpou (reading comp/grammar): 56 questions - 172 points -- worth 50% of the final score
Dokkai: 20 questions in 3 sections
section 1: 6 Q - 5 pts (30 pts)
section 2: 9 Q - 5 pts (45 pts)
section 3: 5 Q - 5 pts (25 pts)
Bunpou: 36 questions in 3 sections
section 4: 20 Q - 2 pts (40 pts)
section 5: 10 Q - 2 pts (20 pts)
section 6: 6 Q - 2 pts (12 pts)
Okay, so now you know point values for each question. Now, how they figure out your score:
For each of the three sections, take your point total and divide it by the MAX POINTS in that section. (Let's call our totals A, B, and C - respectively.) Then multiply the moji/goi and the choukai scores by 100 and the dokkai/bunpou by 200.
Your 'equations' should look something like this:
A / 90 x 100 = X
B / 31 x 100 = Y
C / 172 x 200 = Z
Then add those totals together (X+Y+Z) and you have your JLPT score.